Dealing With Missing Data in R

Chapter 1 introduces you to missing data, explaining what missing values are, their behavior in R, how to detect them, and how to count them. We then introduce missing data summaries and how to summarise missingness across cases, variables, and how to explore across groups within the data. Finally, we discuss missing data visualizations, how to produce overview visualizations for the entire dataset and over variables, cases, and other summaries, and how to explore these across groups.

In chapter two, you will learn how to uncover hidden missing values like "missing" or "N/A" and replace them with `NA`. You will learn how to efficiently handle implicit missing values - those values implied to be missing, but not explicitly listed. We also cover how to explore missing data dependence, discussing Missing Completely at Random (MCAR), Missing At Random (MAR), Missing Not At Random (MNAR), and what they mean for your data analysis.

In this chapter, you will learn about workflows for working with missing data. We introduce special data structures, the shadow matrix, and nabular data, and demonstrate how to use them in workflows for exploring missing data so that you can link summaries of missingness back to values in the data. You will learn how to use ggplot to explore and visualize how values changes as other variables go missing. Finally, you learn how to visualize missingness across two variables, and how and why to visualize missings in a scatterplot.

In this chapter, you will learn about filling in the missing values in your data, which is called imputation. You will learn how to impute and track missing values, and what the good and bad features of imputations are so that you can explore, visualise, and evaluate the imputed data against the original values. You will learn how to use, evaluate, and compare different imputation models, and explore how different imputation models affect the inferences you can draw from the models.